{"schema_version":"1.0","canonical_url":"https://patentable.app/patents/US-9734284","patent":{"patent_number":"US-9734284","title":"Hardware acceleration of short read mapping for genomic and other types of analyses","assignee":null,"inventors":[],"filing_date":"2014-03-08T00:00:00.000Z","publication_date":"2017-08-15T00:00:00.000Z","cpc_codes":["G16B","C12Q","C12Q","G16B","G16B","G16B","C12Q"],"num_claims":21,"abstract":"A scalable FPGA-based solution to the short read mapping problem in DNA sequencing is disclosed which greatly accelerates the task of aligning short length reads to a known reference genome. A representative system comprises one or more memory circuits storing a plurality of short reads and a reference genome sequence; and one or more field programmable gate arrays configured to select a short read; to extract a plurality of seeds from the short read, each seed comprising a genetic subsequence of the short read; for each seed, to determine at least one candidate alignment location (CAL) in the reference genome sequence to form a plurality of CALs; for each CAL, to determine a likelihood of the short read matching the reference genome sequence in the vicinity of the CAL; and to select one or more CALs having the currently greater likelihood of the short read matching the reference genome sequence."},"analysis":{"summary":null,"layman_explanation":null,"technical_analysis":null,"business_analysis":null,"faqs":null,"topics":[],"tech_cluster":null},"seo":{"title":"Hardware acceleration of short read mapping for genomic and other types of analyses","description":"A scalable FPGA-based solution to the short read mapping problem in DNA sequencing is disclosed which greatly accelerates the task of aligning short length reads to a known reference genome. A represe","keywords":[]},"attribution":{"source":"Patentable","source_url":"https://patentable.app","canonical_url":"https://patentable.app/patents/US-9734284","license":"CC-BY-4.0-like","license_terms":"AI-generated analysis on this page (summary, layman_explanation, technical_analysis, business_analysis, faqs) may be reused with attribution and a visible link back to the canonical URL above. Patent abstracts, claims, and bibliographic data are USPTO public domain.","required_link":"https://patentable.app/patents/US-9734284","citation_suggestion":"Patentable. \"Hardware acceleration of short read mapping for genomic and other types of analyses\" (US-9734284). https://patentable.app/patents/US-9734284","copyright_holder":"Nomic Interactive Technology LLC"},"links":{"html":"https://patentable.app/patents/US-9734284","json":"https://patentable.app/api/llm-context/US-9734284","site":"https://patentable.app","llms_txt":"https://patentable.app/llms.txt"},"generated_at":"2026-06-06T05:18:38.695Z"}